#include "../datamanagement/memorymanager.hpp"
#include "../ParserLib/muParser.h"
#include "../settings.hpp"
#include "../commandlineparser.hpp"
#include "define.hpp"
#include <string>
#include <vector>

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Functions
bool	integrate (CommandLineParser &cmdParser)
	Calculate the integral of a function or a data set in a single dimension. More...

bool	integrate2d (CommandLineParser &cmdParser)
	Calculate the integral of a function in two dimensions. More...

bool	differentiate (CommandLineParser &cmdParser)
	Calculate the numerical differential of the passed expression or data set. More...

bool	findExtrema (CommandLineParser &cmdParser)
	This function is a wrapper to the actual extrema localisation function localizeExtremum() further below. More...

bool	findZeroes (CommandLineParser &cmdParser)
	This function is a wrapper to the actual zeros localisation function localizeZero() further below. More...

void	taylor (CommandLineParser &cmdParser)
	This function approximates the passed expression using Taylor's method. More...

bool	fitDataSet (std::string &sCmd, mu::Parser &_parser, MemoryManager &_data, FunctionDefinitionManager &_functions, const Settings &_option)

bool	fastFourierTransform (CommandLineParser &cmdParser)
	This function calculates the fast fourier transform of the passed data set. More...

bool	fastWaveletTransform (CommandLineParser &cmdParser)
	This function calculates the fast wavelet transform of the passed data set. More...

bool	evalPoints (CommandLineParser &cmdParser)
	This function samples a defined expression in an array of discrete values. More...

bool	createDatagrid (CommandLineParser &cmdParser)
	This function calculates a datagrid from passed functions or (x-y-z) data values. More...

bool	writeAudioFile (CommandLineParser &cmdParser)
	This function creates a WAVE file from the selected data set. More...

bool	readAudioFile (CommandLineParser &cmdParser)
	Reads either the audio file meta information or the whole audio file to memory. More...

bool	seekInAudioFile (CommandLineParser &cmdParser)
	Seek a position in an audiofile and extract a length of samples from it. More...

bool	regularizeDataSet (CommandLineParser &cmdParser)
	This function regularizes the samples of a defined x-y-data array such that DeltaX is equal for every x. More...

bool	analyzePulse (CommandLineParser &cmdParser)
	This function performs a pulse analysis on the selected data set. More...

bool	shortTimeFourierAnalysis (CommandLineParser &cmdParser)
	This function performs the short-time fourier analysis on the passed data set. More...

void	boneDetection (CommandLineParser &cmdParser)
	This function is the implementation of the detect command. More...

bool	calculateSplines (CommandLineParser &cmdParser)
	This function approximates the passed data set using cubic splines. More...

void	rotateTable (CommandLineParser &cmdParser)
	This function rotates a table, an image or a datagrid around a specified angle. More...

void	particleSwarmOptimizer (CommandLineParser &cmdParser)
	This function implements a particle swarm optimizer in up to four dimensions (depending on the number of intervals defined). The optimizer has an adaptive velocity part, reducing the overall position variation of the particles over time. More...

void	urlExecute (CommandLineParser &cmdParser)
	This function implements the url command providing an interface to http(s) and (s)ftp URLs. More...

Function Documentation

◆ analyzePulse()

bool analyzePulse ( CommandLineParser & cmdParser )

This function performs a pulse analysis on the selected data set.

Parameters

cmdParser CommandLineParser&

Returns: bool

The function calculates the maximal amplitude, its position, the FWHM, the width near the maximal amplitude (which is different from the FWHM) and the energy in the pulse.

Definition at line 3915 of file command_implementations.cpp.

References _lang, extractRange(), Language::get(), CommandLineParser::getCommandLine(), DataAccessParser::getDataObject(), CommandLineParser::getExprAsDataObject(), NumeReKernel::getInstance(), make_hline(), VectorIndex::OPEN_END, NumeReKernel::print(), NumeReKernel::printPreFmt(), CommandLineParser::setReturnValue(), SyntaxError::TABLE_DOESNT_EXIST, NumeReKernel::toggleTableStatus(), toString(), and toUpperCase().

Referenced by cmd_pulse().

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◆ boneDetection()

void boneDetection ( CommandLineParser & cmdParser )

This function is the implementation of the detect command.

Parameters

cmdParser CommandLineParser&

Returns: void

Definition at line 4133 of file command_implementations.cpp.

References _lang, Indices::col, extractRange(), VectorIndex::front(), Language::get(), MemoryManager::getAppendedZeroes(), CommandLineParser::getCommandLine(), DataAccessParser::getDataObject(), MemoryManager::getElement(), CommandLineParser::getExprAsDataObject(), DataAccessParser::getIndices(), NumeReKernel::getInstance(), MemoryManager::getLines(), NumeReKernel::getMemoryManager(), CommandLineParser::getParameterValueAsNumericalValue(), CommandLineParser::getTargetTable(), interpolateToGrid(), mu::isnan(), VectorIndex::isOpenEnd(), min, VectorIndex::OPEN_END, NumeReKernel::print(), mu::real(), Indices::row, MemoryManager::setHeadLineElement(), VectorIndex::setOpenEndIndex(), VectorIndex::setRange(), VectorIndex::size(), VectorIndex::subidx(), SyntaxError::TABLE_DOESNT_EXIST, and MemoryManager::writeToTable().

Referenced by cmd_detect().

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◆ calculateSplines()

bool calculateSplines ( CommandLineParser & cmdParser )

This function approximates the passed data set using cubic splines.

Parameters

cmdParser CommandLineParser&

Returns: bool

The calculated spline polynomials are defined as new custom functions.

Definition at line 4253 of file command_implementations.cpp.

References _lang, NumeReKernel::bSupressAnswer, FunctionDefinitionManager::defineFunc(), extractRange(), Language::get(), CommandLineParser::getCommandLine(), DataAccessParser::getDataObject(), NumeReKernel::getDefinitions(), CommandLineParser::getExprAsDataObject(), NumeReKernel::getInstance(), NumeReKernel::getSettings(), FunctionDefinitionManager::isDefined(), NumeReKernel::issueWarning(), NumeReKernel::print(), Settings::systemPrints(), SyntaxError::TABLE_DOESNT_EXIST, SyntaxError::TOO_FEW_DATAPOINTS, and toString().

Referenced by cmd_spline().

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◆ createDatagrid()

bool createDatagrid ( CommandLineParser & cmdParser )

This function calculates a datagrid from passed functions or (x-y-z) data values.

Parameters

cmdParser CommandLineParser&

Returns: bool

Definition at line 3312 of file command_implementations.cpp.

Referenced by cmd_datagrid().

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◆ differentiate()

bool differentiate ( CommandLineParser & cmdParser )

Calculate the numerical differential of the passed expression or data set.

Parameters

cmdParser CommandLineParser

Returns: bool

Definition at line 754 of file command_implementations.cpp.

References _lang, date::abs(), NumeRe::SavitzkyGolayDiffFilter::apply(), FunctionDefinitionManager::call(), Indices::col, MemoryManager::containsTablesOrClusters(), mu::Parser::Diff(), mu::ParserBase::Eval(), VectorIndex::front(), SyntaxError::FUNCTION_ERROR, Language::get(), CommandLineParser::getCommandLine(), getDataElements(), DataAccessParser::getDataObject(), NumeReKernel::getDefinitions(), MemoryManager::getElement(), CommandLineParser::getExprAsDataObject(), CommandLineParser::getExprAsMathExpression(), DataAccessParser::getIndices(), NumeReKernel::getInstance(), MemoryManager::getLines(), getMatchingParenthesis(), NumeReKernel::getMemoryManager(), getNextArgument(), CommandLineParser::getParameterList(), CommandLineParser::getParameterValueAsNumericalValue(), NumeReKernel::getParser(), getPointerToVariable(), NumeReKernel::getSettings(), CommandLineParser::hasParam(), intCast(), intPower(), SyntaxError::INVALID_INDEX, SyntaxError::invalid_position, mu::isinf(), mu::isnan(), isNotEmptyExpression(), VectorIndex::isOpenEnd(), NumeReKernel::issueWarning(), MemoryManager::isValidElement(), isValidIndexSet(), min, SyntaxError::NO_DIFF_OPTIONS, SyntaxError::NO_DIFF_VAR, Indices::row, mu::ParserBase::SetExpr(), VectorIndex::setRange(), CommandLineParser::setReturnValue(), VectorIndex::size(), MemoryManager::sortElements(), SyntaxError::STRINGS_MAY_NOT_BE_EVALUATED_WITH_CMD, StripSpaces(), VectorIndex::to_string(), and MemoryManager::writeToTable().

Referenced by cmd_diff().

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◆ evalPoints()

bool evalPoints ( CommandLineParser & cmdParser )

This function samples a defined expression in an array of discrete values.

Parameters

cmdParser CommandLineParser&

Returns: bool

Definition at line 3175 of file command_implementations.cpp.

Referenced by cmd_eval().

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◆ fastFourierTransform()

bool fastFourierTransform ( CommandLineParser & cmdParser )

This function calculates the fast fourier transform of the passed data set.

Parameters

cmdParser CommandLineParser&

Returns: bool

The user may switch between complex or phase- amplitude layout and whether an inverse transform shall be calculated.

Definition at line 2855 of file command_implementations.cpp.

References _lang, FFTData::bComplex, FFTData::bInverseTrafo, FFTData::bShiftAxis, calculate1dFFT(), calculate2dFFT(), FFTData::cols, FFTData::dFrequencyOffset, FFTData::dNyquistFrequency, FFTData::dTimeInterval, extractRange(), Language::get(), CommandLineParser::getCommand(), CommandLineParser::getCommandLine(), DataAccessParser::getDataObject(), CommandLineParser::getExpr(), CommandLineParser::getExprAsDataObject(), NumeReKernel::getInstance(), NumeReKernel::getMemoryManager(), NumeReKernel::getSettings(), getShiftedAxis(), CommandLineParser::getTargetTable(), CommandLineParser::hasParam(), mu::isnan(), LineBreak(), FFTData::lines, VectorIndex::OPEN_END, NumeReKernel::printPreFmt(), mu::real(), Settings::systemPrints(), SyntaxError::TABLE_DOESNT_EXIST, toString(), toSystemCodePage(), and SyntaxError::WRONG_DATA_SIZE.

Referenced by cmd_fft().

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◆ fastWaveletTransform()

bool fastWaveletTransform ( CommandLineParser & cmdParser )

This function calculates the fast wavelet transform of the passed data set.

Parameters

cmdParser CommandLineParser&

Returns: bool

The user may select the wavelet type from a predefined set of wavelets and determine, whether an inverse transform shall be calculated.

Definition at line 3003 of file command_implementations.cpp.

References _lang, BSpline, calculateWavelet(), CenteredBSpline, CenteredDaubechies, CenteredHaar, Indices::col, Daubechies, decodeWaveletData(), extractRange(), VectorIndex::front(), Language::get(), NumeRe::Table::getCols(), CommandLineParser::getCommandLine(), DataAccessParser::getDataObject(), CommandLineParser::getExprAsDataObject(), NumeReKernel::getInstance(), NumeRe::Table::getLines(), NumeReKernel::getMemoryManager(), CommandLineParser::getParameterValue(), CommandLineParser::getParameterValueAsNumericalValue(), NumeReKernel::getSettings(), CommandLineParser::getTargetTable(), NumeRe::Table::getValue(), Haar, CommandLineParser::hasParam(), intCast(), VectorIndex::INVALID, VectorIndex::isOpenEnd(), LineBreak(), NumeReKernel::printPreFmt(), Indices::row, MemoryManager::setHeadLineElement(), VectorIndex::setRange(), Settings::systemPrints(), SyntaxError::TABLE_DOESNT_EXIST, toSystemCodePage(), and MemoryManager::writeToTable().

Referenced by cmd_fwt().

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◆ findExtrema()

bool findExtrema ( CommandLineParser & cmdParser )

This function is a wrapper to the actual extrema localisation function localizeExtremum() further below.

Parameters

cmdParser CommandLineParser&

Returns: bool

Definition at line 1398 of file command_implementations.cpp.

References date::abs(), FunctionDefinitionManager::call(), MemoryManager::containsTablesOrClusters(), mu::Parser::Diff(), mu::ParserBase::Eval(), CommandLineParser::exprContainsDataObjects(), SyntaxError::EXTREMA_VAR_NOT_FOUND, findCommand(), findExtremaInData(), findExtremaInMultiResult(), findParameter(), findVariableInExpression(), getAllIndices(), getArgAtPos(), CommandLineParser::getCommandLine(), getDataElements(), NumeReKernel::getDefinitions(), CommandLineParser::getExpr(), NumeReKernel::getInstance(), getIntervalForSearchFunctions(), NumeReKernel::getMemoryManager(), CommandLineParser::getParameterList(), NumeReKernel::getParser(), getPointerToVariable(), Settings::getPrecision(), NumeReKernel::getSettings(), NumeReKernel::getStringParser(), intCast(), SyntaxError::invalid_position, mu::isinf(), mu::isnan(), isNotEmptyExpression(), NumeRe::StringParser::isStringExpression(), localizeExtremum(), SyntaxError::NO_EXTREMA_OPTIONS, SyntaxError::NO_EXTREMA_VAR, mu::real(), mu::ParserBase::SetExpr(), CommandLineParser::setReturnValue(), SyntaxError::STRINGS_MAY_NOT_BE_EVALUATED_WITH_CMD, StripSpaces(), and toString().

Referenced by cmd_extrema().

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◆ findZeroes()

bool findZeroes ( CommandLineParser & cmdParser )

This function is a wrapper to the actual zeros localisation function localizeZero() further below.

Parameters

cmdParser CommandLineParser&

Returns: bool

Definition at line 1859 of file command_implementations.cpp.

References date::abs(), FunctionDefinitionManager::call(), MemoryManager::containsTablesOrClusters(), mu::ParserBase::Eval(), CommandLineParser::exprContainsDataObjects(), findParameter(), findVariableInExpression(), findZeroesInData(), findZeroesInMultiResult(), getAllIndices(), getArgAtPos(), CommandLineParser::getCommandLine(), getDataElements(), NumeReKernel::getDefinitions(), CommandLineParser::getExpr(), NumeReKernel::getInstance(), getIntervalForSearchFunctions(), NumeReKernel::getMemoryManager(), CommandLineParser::getParameterList(), NumeReKernel::getParser(), getPointerToVariable(), NumeReKernel::getSettings(), NumeReKernel::getStringParser(), intCast(), SyntaxError::invalid_position, mu::isinf(), mu::isnan(), isNotEmptyExpression(), NumeRe::StringParser::isStringExpression(), localizeExtremum(), localizeZero(), SyntaxError::NO_ZEROES_OPTIONS, SyntaxError::NO_ZEROES_VAR, mu::real(), mu::ParserBase::SetExpr(), CommandLineParser::setReturnValue(), SyntaxError::STRINGS_MAY_NOT_BE_EVALUATED_WITH_CMD, StripSpaces(), and SyntaxError::ZEROES_VAR_NOT_FOUND.

Referenced by cmd_zeroes().

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◆ fitDataSet()

bool fitDataSet	(	std::string &	sCmd,
		mu::Parser &	_parser,
		MemoryManager &	_data,
		FunctionDefinitionManager &	_functions,
		const Settings &	_option
	)

Definition at line 73 of file fitting.cpp.

References _lang, applyFitAlgorithm(), FittingData::b1DChiMap, FittingData::bNoParams, FittingData::bSaveErrors, FittingData::bUseErrors, calculateChiMap(), calculateCovarianceData(), calculatePercentageAvgAndCreateParserVariables(), SyntaxError::CANNOT_BE_A_FITTING_PARAM, SyntaxError::CANNOT_OPEN_FITLOG, constructCovarianceMatrix(), MemoryManager::containsTablesOrClusters(), createTeXExport(), FunctionDefinitionManager::defineFunc(), FittingData::dPrecision, mu::ParserBase::Eval(), evaluateFittingParams(), findCommand(), SyntaxError::FITFUNC_NOT_CONTAINS, Language::get(), Fitcontroller::getCovarianceMatrix(), getDataForFit(), FunctionDefinitionManager::getDefinitionString(), getFitAnalysis(), Fitcontroller::getFitChi(), Fitcontroller::getFitFunction(), getFitOptionsTable(), getFittingParameters(), FunctionDefinitionManager::getFunctionIndex(), getParameterTable(), getTimeStamp(), mu::ParserBase::GetUsedVar(), Settings::getWindow(), IntervalSet::intervals, SyntaxError::invalid_position, FunctionDefinitionManager::isDefined(), NumeReKernel::issueWarning(), FittingData::ivl, LineBreak(), make_hline(), FittingData::nDim, FittingData::nFitVars, FittingData::nMaxIterations, SyntaxError::NO_DATA_FOR_FIT, SyntaxError::NO_PARAMS_FOR_FIT, SyntaxError::OVERFITTING_ERROR, NumeReKernel::print(), NumeReKernel::printPreFmt(), reduceLogFilesize(), removeObsoleteParentheses(), FittingData::restricted, FittingData::sChiMap, FittingData::sChiMap_Vars, mu::ParserBase::SetExpr(), FittingData::sFitFunction, FittingData::sParams, FittingData::sRestrictions, strfill(), StripSpaces(), Settings::systemPrints(), NumeReKernel::toggleTableStatus(), toSystemCodePage(), toUpperCase(), FileSystem::ValidFileName(), FittingData::vx, FittingData::vy, FittingData::vz, and FittingData::vz_w.

Referenced by cmd_fit().

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◆ integrate()

bool integrate ( CommandLineParser & cmdParser )

Calculate the integral of a function or a data set in a single dimension.

Parameters

cmdParser CommandLineParser&

Returns: bool

Definition at line 272 of file command_implementations.cpp.

References _defVars, _lang, date::abs(), mu::ParserBase::Eval(), Language::get(), NumeReKernel::GetAsyncCancelState(), CommandLineParser::getCommandLine(), CommandLineParser::getExprAsMathExpression(), NumeReKernel::getInstance(), getMatchingParenthesis(), NumeReKernel::getMemoryManager(), CommandLineParser::getParameterValue(), CommandLineParser::getParameterValueAsNumericalValue(), NumeReKernel::getParser(), NumeReKernel::getSettings(), CommandLineParser::hasParam(), intCast(), integrateSingleDimensionData(), integrationstep_simpson(), integrationstep_trapezoidal(), SyntaxError::INVALID_INTEGRATION_PRECISION, SyntaxError::INVALID_INTEGRATION_RANGES, SyntaxError::invalid_position, mu::isinf(), mu::isnan(), MemoryManager::isTable(), max, min, SyntaxError::NO_INTEGRATION_FUNCTION, SyntaxError::NO_INTEGRATION_RANGES, CommandLineParser::parseIntervals(), NumeReKernel::printPreFmt(), SyntaxError::PROCESS_ABORTED_BY_USER, mu::rint(), mu::ParserBase::SetExpr(), CommandLineParser::setReturnValue(), SIMPSON, IntervalSet::size(), SyntaxError::STRINGS_MAY_NOT_BE_EVALUATED_WITH_CMD, Settings::systemPrints(), toString(), TRAPEZOIDAL, and DefaultVariables::vValue.

Referenced by cmd_integrate().

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◆ integrate2d()

bool integrate2d ( CommandLineParser & cmdParser )

Calculate the integral of a function in two dimensions.

Parameters

cmdParser CommandLineParser&

Returns: bool

Definition at line 481 of file command_implementations.cpp.

References _defVars, _lang, date::abs(), mu::ParserBase::Eval(), Language::get(), NumeReKernel::GetAsyncCancelState(), CommandLineParser::getCommandLine(), CommandLineParser::getExprAsMathExpression(), NumeReKernel::getInstance(), CommandLineParser::getParameterValue(), CommandLineParser::getParameterValueAsNumericalValue(), NumeReKernel::getParser(), NumeReKernel::getSettings(), intCast(), integrationstep_simpson(), integrationstep_trapezoidal(), IntervalSet::intervals, SyntaxError::INVALID_INTEGRATION_PRECISION, SyntaxError::INVALID_INTEGRATION_RANGES, SyntaxError::invalid_position, mu::isinf(), mu::isnan(), max, min, SyntaxError::NO_INTEGRATION_FUNCTION, SyntaxError::NO_INTEGRATION_RANGES, CommandLineParser::parseIntervals(), NumeReKernel::printPreFmt(), SyntaxError::PROCESS_ABORTED_BY_USER, refreshBoundaries(), mu::rint(), mu::ParserBase::SetExpr(), CommandLineParser::setReturnValue(), SIMPSON, DefaultVariables::sName, SyntaxError::STRINGS_MAY_NOT_BE_EVALUATED_WITH_CMD, Settings::systemPrints(), toString(), TRAPEZOIDAL, and DefaultVariables::vValue.

Referenced by cmd_integrate().

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◆ particleSwarmOptimizer()

void particleSwarmOptimizer ( CommandLineParser & cmdParser )

This function implements a particle swarm optimizer in up to four dimensions (depending on the number of intervals defined). The optimizer has an adaptive velocity part, reducing the overall position variation of the particles over time.

Parameters

cmdParser CommandLineParser&